Bo's Tools

miRNA Hairpin Aligner and Visualizer

Parameters

Hairpin Sequence:

miRNA Sequence:

miRNA* Sequence:

Smith-Waterman Scores

Match Score:

Mismatch Penalty:

Gap Open Penalty:

Gap Extent Panalty:

Quality Filter

Minimal SmithWaterman Score:

Minimal PHRED Score:

Input Fasta/q (can be gzipped; <10M)

Check Example Output